STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prp5Pre-mRNA-processing ATP-dependent RNA helicase prp5; ATP-dependent RNA helicase involved spliceosome assembly and in nuclear splicing. Catalyzes an ATP-dependent conformational change of U2 snRNP. Bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA (By similarity); Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily. (1114 aa)    
Predicted Functional Partners:
SS1G_03093
Uncharacterized protein.
   
 0.997
SS1G_04016
Uncharacterized protein.
   
 0.997
SS1G_13650
Uncharacterized protein.
    
 0.997
SS1G_01195
Matrin-type domain-containing protein.
    
 0.996
SS1G_06434
Matrin-type domain-containing protein.
   
 0.996
SS1G_08575
Uncharacterized protein.
    
 0.996
SS1G_06970
CPSF_A domain-containing protein.
    
 0.995
SS1G_14138
Splicing factor subunit; Belongs to the SF3B5 family.
    
 0.995
SS1G_14262
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.994
SS1G_07788
PSP domain-containing protein.
   
 0.987
Your Current Organism:
Sclerotinia sclerotiorum
NCBI taxonomy Id: 665079
Other names: S. sclerotiorum 1980 UF-70, Sclerotinia sclerotiorum 1980 UF-70
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.