STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB24116.1TRAP-type C4-dicarboxylate transport system, small permease component. (183 aa)    
Predicted Functional Partners:
SDB24124.1
C4-dicarboxylate transporter, DctM subunit.
  
  0.882
SDB24135.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.828
SDB24106.1
5-formyl-3-hydroxy-2-methylpyridine 4-carboxylate dehydrogenase.
       0.778
SDB24098.1
Glutathione S-transferase; Belongs to the GST superfamily.
       0.773
SDB24085.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
 
     0.705
SDB24080.1
Uncharacterized conserved protein.
 
     0.702
SDB08368.1
C4-dicarboxylate transporter, DctQ subunit.
  
  
  0.609
SDB24067.1
Gentisate 1,2-dioxygenase.
 
     0.576
SDB06932.1
TRAP transporter, DctM subunit.
  
  0.502
SDB08364.1
C4-dicarboxylate transporter, DctM subunit.
  
  0.502
Your Current Organism:
Bauldia litoralis
NCBI taxonomy Id: 665467
Other names: ATCC 35022, B. litoralis, NCIB 2233, NCIB:2233, Prosthecomicrobium litoralum, strain 524-16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.