STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB25393.1Glycine betaine/proline transport system substrate-binding protein. (335 aa)    
Predicted Functional Partners:
SDB25402.1
Glycine betaine/proline transport system permease protein.
 
 0.999
SDB25410.1
Glycine betaine/proline transport system ATP-binding protein.
 
 0.999
SDB25385.1
Osmoprotectant transport system permease protein.
 
 0.695
SDB25367.1
Osmoprotectant transport system permease protein.
 
 
 0.665
purN
Phosphoribosylglycinamide formyltransferase-1; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
    0.525
SDB25357.1
Osmoprotectant transport system substrate-binding protein.
   
 
 0.488
SDB41282.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
     
 0.468
SDB08083.1
Dipeptide transport system substrate-binding protein.
  
  
  0.440
SDB35035.1
ABC-2 type transport system permease protein.
  
  
  0.434
SDB15551.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
    
  0.413
Your Current Organism:
Bauldia litoralis
NCBI taxonomy Id: 665467
Other names: ATCC 35022, B. litoralis, NCIB 2233, NCIB:2233, Prosthecomicrobium litoralum, strain 524-16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.