STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapCUncharacterized protein, contains PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (129 aa)    
Predicted Functional Partners:
SDB39687.1
Hypothetical protein.
  
 
 0.893
SDB30753.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
     0.844
SDB30764.1
methylmalonyl-CoA mutase.
       0.642
SDB30774.1
Hypothetical protein.
       0.642
SDB30786.1
methylmalonyl-CoA mutase.
       0.642
SDB30796.1
Predicted DNA-binding protein, MmcQ/YjbR family.
       0.625
SDB30810.1
Hypothetical protein.
 
     0.600
SDB30728.1
Twin-arg-translocated uncharacterized repeat-containing protein.
       0.578
Your Current Organism:
Bauldia litoralis
NCBI taxonomy Id: 665467
Other names: ATCC 35022, B. litoralis, NCIB 2233, NCIB:2233, Prosthecomicrobium litoralum, strain 524-16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.