STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB36847.1dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family. (391 aa)    
Predicted Functional Partners:
SDB36837.1
Transferase hexapeptide (six repeat-containing protein).
 
 
 0.986
SDB36821.1
O-antigen biosynthesis protein WbqV.
 
 
 0.970
SDB36829.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
  
 0.959
SDB17964.1
Undecaprenyl-phosphate glucose phosphotransferase.
 
 0.948
SDB08696.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.852
SDB36810.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
  0.804
SDB36794.1
Threonine dehydrogenase.
 
 
  0.772
SDB23651.1
Hypothetical protein.
  
 
 0.769
SDB59321.1
ferredoxin-NAD(P)+ reductase (naphthalene dioxygenase ferredoxin-specific).
  
 
 0.769
SDB45257.1
NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family.
  
 
  0.671
Your Current Organism:
Bauldia litoralis
NCBI taxonomy Id: 665467
Other names: ATCC 35022, B. litoralis, NCIB 2233, NCIB:2233, Prosthecomicrobium litoralum, strain 524-16
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