STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB36890.1Asparagine synthase (glutamine-hydrolysing). (610 aa)    
Predicted Functional Partners:
SDB36899.1
tRNA synthetases class I (E and Q), catalytic domain; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.795
SDB36880.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.773
SDB03298.1
Glutamate synthase (NADH) large subunit.
  
 
 0.741
SDB08836.1
Aspartate kinase; Belongs to the aspartokinase family.
  
 
 0.591
SDB40547.1
Amino acid adenylation domain-containing protein.
 
 
 0.589
SDB36908.1
UDP-glucose 4-epimerase.
 
    0.569
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
 
 0.543
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
   
 0.540
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
   
 
 0.528
SDB53314.1
GNAT-family acetyltransferase TIGR03103.
 
  
 0.522
Your Current Organism:
Bauldia litoralis
NCBI taxonomy Id: 665467
Other names: ATCC 35022, B. litoralis, NCIB 2233, NCIB:2233, Prosthecomicrobium litoralum, strain 524-16
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