SDB43401.1 protein (Bauldia litoralis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDB43401.1

Hypothetical protein. (270 aa)

Predicted Functional Partners:

SDB39910.1

0.907

SDB46195.1

0.822

SDB12441.1

0.819

SDB41467.1

0.792

SDB37267.1

0.773

SDB51324.1

0.773

SDB24435.1

0.764

SDB20574.1

0.748

SDB03083.1

0.743

SDB13923.1

0.741

Your Current Organism:

Bauldia litoralis

NCBI taxonomy Id: 665467
Other names: ATCC 35022, B. litoralis, NCIB 2233, NCIB:2233, Prosthecomicrobium litoralum, strain 524-16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDB03083.1	SDB12441.1	SAMN02982931_00139	SAMN02982931_00923	Type I secretion C-terminal target domain (VC_A0849 subclass).	Hemolysin-type calcium-binding repeat-containing protein.	0.828
SDB03083.1	SDB20574.1	SAMN02982931_00139	SAMN02982931_01509	Type I secretion C-terminal target domain (VC_A0849 subclass).	Ca2+-binding protein, RTX toxin-related.	0.760
SDB03083.1	SDB39910.1	SAMN02982931_00139	SAMN02982931_02986	Type I secretion C-terminal target domain (VC_A0849 subclass).	Hemolysin-type calcium-binding repeat-containing protein.	0.763
SDB03083.1	SDB41467.1	SAMN02982931_00139	SAMN02982931_03153	Type I secretion C-terminal target domain (VC_A0849 subclass).	Type I secretion C-terminal target domain (VC_A0849 subclass).	0.507
SDB03083.1	SDB43401.1	SAMN02982931_00139	SAMN02982931_03258	Type I secretion C-terminal target domain (VC_A0849 subclass).	Hypothetical protein.	0.743
SDB03083.1	SDB46195.1	SAMN02982931_00139	SAMN02982931_03597	Type I secretion C-terminal target domain (VC_A0849 subclass).	Hypothetical protein.	0.531
SDB03083.1	SDB51324.1	SAMN02982931_00139	SAMN02982931_04055	Type I secretion C-terminal target domain (VC_A0849 subclass).	Hypothetical protein.	0.640
SDB12441.1	SDB03083.1	SAMN02982931_00923	SAMN02982931_00139	Hemolysin-type calcium-binding repeat-containing protein.	Type I secretion C-terminal target domain (VC_A0849 subclass).	0.828
SDB12441.1	SDB13923.1	SAMN02982931_00923	SAMN02982931_01054	Hemolysin-type calcium-binding repeat-containing protein.	Ca2+-binding protein, RTX toxin-related.	0.547
SDB12441.1	SDB20574.1	SAMN02982931_00923	SAMN02982931_01509	Hemolysin-type calcium-binding repeat-containing protein.	Ca2+-binding protein, RTX toxin-related.	0.998
SDB12441.1	SDB24435.1	SAMN02982931_00923	SAMN02982931_01887	Hemolysin-type calcium-binding repeat-containing protein.	Hypothetical protein.	0.843
SDB12441.1	SDB37267.1	SAMN02982931_00923	SAMN02982931_02847	Hemolysin-type calcium-binding repeat-containing protein.	Hemolysin-type calcium-binding repeat-containing protein.	0.920
SDB12441.1	SDB39910.1	SAMN02982931_00923	SAMN02982931_02986	Hemolysin-type calcium-binding repeat-containing protein.	Hemolysin-type calcium-binding repeat-containing protein.	0.940
SDB12441.1	SDB41467.1	SAMN02982931_00923	SAMN02982931_03153	Hemolysin-type calcium-binding repeat-containing protein.	Type I secretion C-terminal target domain (VC_A0849 subclass).	0.773
SDB12441.1	SDB43401.1	SAMN02982931_00923	SAMN02982931_03258	Hemolysin-type calcium-binding repeat-containing protein.	Hypothetical protein.	0.819
SDB12441.1	SDB46195.1	SAMN02982931_00923	SAMN02982931_03597	Hemolysin-type calcium-binding repeat-containing protein.	Hypothetical protein.	0.774
SDB12441.1	SDB51324.1	SAMN02982931_00923	SAMN02982931_04055	Hemolysin-type calcium-binding repeat-containing protein.	Hypothetical protein.	0.771
SDB13923.1	SDB12441.1	SAMN02982931_01054	SAMN02982931_00923	Ca2+-binding protein, RTX toxin-related.	Hemolysin-type calcium-binding repeat-containing protein.	0.547
SDB13923.1	SDB20574.1	SAMN02982931_01054	SAMN02982931_01509	Ca2+-binding protein, RTX toxin-related.	Ca2+-binding protein, RTX toxin-related.	0.763
SDB13923.1	SDB39910.1	SAMN02982931_01054	SAMN02982931_02986	Ca2+-binding protein, RTX toxin-related.	Hemolysin-type calcium-binding repeat-containing protein.	0.765