M2RD40_COCSN protein (Bipolaris sorokiniana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M2RD40_COCSN

Uncharacterized protein; Belongs to the WD repeat SEC13 family. (505 aa)

Predicted Functional Partners:

M2RXB8_COCSN

0.999

M2RXG9_COCSN

0.999

M2S255_COCSN

0.999

M2SC70_COCSN

0.999

M2TK59_COCSN

0.999

M2S9Y6_COCSN

0.998

M2STX7_COCSN

0.998

M2T435_COCSN

0.998

M2SS06_COCSN

0.997

M2SEA7_COCSN

0.993

Your Current Organism:

Bipolaris sorokiniana

NCBI taxonomy Id: 665912
Other names: B. sorokiniana ND90Pr, Bipolaris sorokiniana ND90Pr, Cochliobolus sativus ND90Pr

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M2RD40_COCSN	M2RXB8_COCSN	M2RD40	M2RXB8	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Nsp1_C domain-containing protein.	0.999
M2RD40_COCSN	M2RXG9_COCSN	M2RD40	M2RXG9	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.999
M2RD40_COCSN	M2S255_COCSN	M2RD40	M2S255	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.999
M2RD40_COCSN	M2S9Y6_COCSN	M2RD40	M2S9Y6	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	WD_REPEATS_REGION domain-containing protein.	0.998
M2RD40_COCSN	M2SC70_COCSN	M2RD40	M2SC70	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.999
M2RD40_COCSN	M2SEA7_COCSN	M2RD40	M2SEA7	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.993
M2RD40_COCSN	M2SS06_COCSN	M2RD40	M2SS06	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.997
M2RD40_COCSN	M2STX7_COCSN	M2RD40	M2STX7	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Zinc_ribbon_16 domain-containing protein.	0.998
M2RD40_COCSN	M2T435_COCSN	M2RD40	M2T435	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	WD_REPEATS_REGION domain-containing protein.	0.998
M2RD40_COCSN	M2TK59_COCSN	M2RD40	M2TK59	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
M2RXB8_COCSN	M2RD40_COCSN	M2RXB8	M2RD40	Nsp1_C domain-containing protein.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.999
M2RXB8_COCSN	M2RXG9_COCSN	M2RXB8	M2RXG9	Nsp1_C domain-containing protein.	Uncharacterized protein.	0.999
M2RXB8_COCSN	M2S255_COCSN	M2RXB8	M2S255	Nsp1_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.999
M2RXB8_COCSN	M2SC70_COCSN	M2RXB8	M2SC70	Nsp1_C domain-containing protein.	Uncharacterized protein.	0.999
M2RXB8_COCSN	M2SEA7_COCSN	M2RXB8	M2SEA7	Nsp1_C domain-containing protein.	Uncharacterized protein.	0.999
M2RXB8_COCSN	M2TK59_COCSN	M2RXB8	M2TK59	Nsp1_C domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
M2RXG9_COCSN	M2RD40_COCSN	M2RXG9	M2RD40	Uncharacterized protein.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.999
M2RXG9_COCSN	M2RXB8_COCSN	M2RXG9	M2RXB8	Uncharacterized protein.	Nsp1_C domain-containing protein.	0.999
M2RXG9_COCSN	M2S255_COCSN	M2RXG9	M2S255	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.999
M2RXG9_COCSN	M2SC70_COCSN	M2RXG9	M2SC70	Uncharacterized protein.	Uncharacterized protein.	0.999