M2S9T4_COCSN protein (Bipolaris sorokiniana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M2S9T4_COCSN

SET domain-containing protein. (388 aa)

Predicted Functional Partners:

M2S4M4_COCSN

0.946

M2SRL1_COCSN

0.928

M2T6N5_COCSN

0.919

M2R8X1_COCSN

0.907

M2SX39_COCSN

0.903

M2S6U2_COCSN

0.900

M2SBZ4_COCSN

0.445

M2QWG0_COCSN

0.435

M2SB23_COCSN

0.428

M2SQH4_COCSN

0.428

Your Current Organism:

Bipolaris sorokiniana

NCBI taxonomy Id: 665912
Other names: B. sorokiniana ND90Pr, Bipolaris sorokiniana ND90Pr, Cochliobolus sativus ND90Pr

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M2QWG0_COCSN	M2S4M4_COCSN	M2QWG0	M2S4M4	VEFS-Box domain-containing protein.	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	0.444
M2QWG0_COCSN	M2S6U2_COCSN	M2QWG0	M2S6U2	VEFS-Box domain-containing protein.	Uncharacterized protein.	0.435
M2QWG0_COCSN	M2S9T4_COCSN	M2QWG0	M2S9T4	VEFS-Box domain-containing protein.	SET domain-containing protein.	0.435
M2QWG0_COCSN	M2SBZ4_COCSN	M2QWG0	M2SBZ4	VEFS-Box domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
M2QWG0_COCSN	M2SRL1_COCSN	M2QWG0	M2SRL1	VEFS-Box domain-containing protein.	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.	0.498
M2QWG0_COCSN	M2SX39_COCSN	M2QWG0	M2SX39	VEFS-Box domain-containing protein.	Uncharacterized protein.	0.444
M2R8X1_COCSN	M2S4M4_COCSN	M2R8X1	M2S4M4	SET domain-containing protein.	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	0.961
M2R8X1_COCSN	M2S6U2_COCSN	M2R8X1	M2S6U2	SET domain-containing protein.	Uncharacterized protein.	0.908
M2R8X1_COCSN	M2S9T4_COCSN	M2R8X1	M2S9T4	SET domain-containing protein.	SET domain-containing protein.	0.907
M2R8X1_COCSN	M2SRL1_COCSN	M2R8X1	M2SRL1	SET domain-containing protein.	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.	0.963
M2R8X1_COCSN	M2SX39_COCSN	M2R8X1	M2SX39	SET domain-containing protein.	Uncharacterized protein.	0.915
M2R8X1_COCSN	M2T6N5_COCSN	M2R8X1	M2T6N5	SET domain-containing protein.	Histone-lysine N-methyltransferase, H3 lysine-79 specific; Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones.	0.949
M2S4M4_COCSN	M2QWG0_COCSN	M2S4M4	M2QWG0	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	VEFS-Box domain-containing protein.	0.444
M2S4M4_COCSN	M2R8X1_COCSN	M2S4M4	M2R8X1	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	SET domain-containing protein.	0.961
M2S4M4_COCSN	M2S6U2_COCSN	M2S4M4	M2S6U2	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	Uncharacterized protein.	0.954
M2S4M4_COCSN	M2S9T4_COCSN	M2S4M4	M2S9T4	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	SET domain-containing protein.	0.946
M2S4M4_COCSN	M2SB23_COCSN	M2S4M4	M2SB23	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	WD_REPEATS_REGION domain-containing protein.	0.998
M2S4M4_COCSN	M2SBZ4_COCSN	M2S4M4	M2SBZ4	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	WD_REPEATS_REGION domain-containing protein.	0.487
M2S4M4_COCSN	M2SQH4_COCSN	M2S4M4	M2SQH4	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	SPRY domain-containing protein.	0.998
M2S4M4_COCSN	M2SRL1_COCSN	M2S4M4	M2SRL1	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.	0.975