M2T8R0_COCSN protein (Bipolaris sorokiniana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M2T8R0_COCSN

Uncharacterized protein. (340 aa)

Predicted Functional Partners:

uba4

0.975

M2QVC9_COCSN

0.973

M2SU25_COCSN

0.964

M2T581_COCSN

0.964

M2TF99_COCSN

0.964

M2T602_COCSN

0.954

M2TJF2_COCSN

0.954

M2RT79_COCSN

0.948

M2T7A5_COCSN

0.948

M2TDW0_COCSN

0.948

Your Current Organism:

Bipolaris sorokiniana

NCBI taxonomy Id: 665912
Other names: B. sorokiniana ND90Pr, Bipolaris sorokiniana ND90Pr, Cochliobolus sativus ND90Pr

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M2QVC9_COCSN	M2SU25_COCSN	M2QVC9	M2SU25	Aminotran_5 domain-containing protein.	Uncharacterized protein.	0.406
M2QVC9_COCSN	M2T581_COCSN	M2QVC9	M2T581	Aminotran_5 domain-containing protein.	Uncharacterized protein.	0.406
M2QVC9_COCSN	M2T8R0_COCSN	M2QVC9	M2T8R0	Aminotran_5 domain-containing protein.	Uncharacterized protein.	0.973
M2QVC9_COCSN	M2TF99_COCSN	M2QVC9	M2TF99	Aminotran_5 domain-containing protein.	Uncharacterized protein.	0.406
M2QVC9_COCSN	uba4	M2QVC9	M2QXC4	Aminotran_5 domain-containing protein.	Adenylyltransferase and sulfurtransferase uba4; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers urm1 and MOCS2A. Its N-terminus first activates urm1 and MOCS2A as acyl- adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to urm1 and MOCS2A to form thiocarboxylation (- COSH) of their C-terminus. The reaction probably involves hydrogen sulfide [...]	0.997
M2RT79_COCSN	M2SU25_COCSN	M2RT79	M2SU25	Flavodoxin-like domain-containing protein.	Uncharacterized protein.	0.950
M2RT79_COCSN	M2T581_COCSN	M2RT79	M2T581	Flavodoxin-like domain-containing protein.	Uncharacterized protein.	0.950
M2RT79_COCSN	M2T7A5_COCSN	M2RT79	M2T7A5	Flavodoxin-like domain-containing protein.	Uncharacterized protein.	0.616
M2RT79_COCSN	M2T8R0_COCSN	M2RT79	M2T8R0	Flavodoxin-like domain-containing protein.	Uncharacterized protein.	0.948
M2RT79_COCSN	M2TDW0_COCSN	M2RT79	M2TDW0	Flavodoxin-like domain-containing protein.	Uncharacterized protein.	0.619
M2RT79_COCSN	M2TF99_COCSN	M2RT79	M2TF99	Flavodoxin-like domain-containing protein.	Uncharacterized protein.	0.950
M2SU25_COCSN	M2QVC9_COCSN	M2SU25	M2QVC9	Uncharacterized protein.	Aminotran_5 domain-containing protein.	0.406
M2SU25_COCSN	M2RT79_COCSN	M2SU25	M2RT79	Uncharacterized protein.	Flavodoxin-like domain-containing protein.	0.950
M2SU25_COCSN	M2T581_COCSN	M2SU25	M2T581	Uncharacterized protein.	Uncharacterized protein.	0.902
M2SU25_COCSN	M2T8R0_COCSN	M2SU25	M2T8R0	Uncharacterized protein.	Uncharacterized protein.	0.964
M2SU25_COCSN	M2TF99_COCSN	M2SU25	M2TF99	Uncharacterized protein.	Uncharacterized protein.	0.900
M2SU25_COCSN	uba4	M2SU25	M2QXC4	Uncharacterized protein.	Adenylyltransferase and sulfurtransferase uba4; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers urm1 and MOCS2A. Its N-terminus first activates urm1 and MOCS2A as acyl- adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to urm1 and MOCS2A to form thiocarboxylation (- COSH) of their C-terminus. The reaction probably involves hydrogen sulfide [...]	0.650
M2T581_COCSN	M2QVC9_COCSN	M2T581	M2QVC9	Uncharacterized protein.	Aminotran_5 domain-containing protein.	0.406
M2T581_COCSN	M2RT79_COCSN	M2T581	M2RT79	Uncharacterized protein.	Flavodoxin-like domain-containing protein.	0.950
M2T581_COCSN	M2SU25_COCSN	M2T581	M2SU25	Uncharacterized protein.	Uncharacterized protein.	0.902