STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaNDNA polymerase III beta subunit DnaN. (372 aa)    
Predicted Functional Partners:
dnaX
DNA polymerase III subunit tau.
 
 
 0.998
AII88421.1
Hypothetical protein.
   
 0.998
AII88015.1
Hypothetical protein, DNA polymerase III delta subunit.
 
 0.997
dnaA
Chromosomal replication initiatior protein DnaA.
 0.996
dnaQ
DNA polymerase III subunit epsilon.
 
 0.996
polA
DNA polymerase I.
 
 0.992
dnaE2
DNA polymerase III 1 alpha subunit DnaE.
  
 
 0.984
AII88320.1
Hypothetical protein.
 
 0.979
AII87310.1
Putative DNA polymerase III chi subunit, HolC.
  
 
 0.974
mutS
DNA mismatch repair protein MutS.
  
 0.950
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.