STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaE1DNA polymerase III 2 alpha subunit DnaE. (1016 aa)    
Predicted Functional Partners:
AII88266.1
Hypothetical protein.
 
     0.976
AII86035.1
Putative protein ImuB.
 
 
 0.910
AII87739.1
Hypothetical protein.
 
  
 0.852
AII88015.1
Hypothetical protein, DNA polymerase III delta subunit.
  
 
 0.849
AII88421.1
Hypothetical protein.
  
 0.826
dnaQ
DNA polymerase III subunit epsilon.
   
 0.825
dnaN
DNA polymerase III beta subunit DnaN.
    
 0.800
dnaX
DNA polymerase III subunit tau.
  
 0.795
AII87049.1
Single-stranded DNA-binding protein.
   
 0.724
AII87310.1
Putative DNA polymerase III chi subunit, HolC.
   
 0.714
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.