STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII85716.1Sugar ABC transporter ATP-binding protein. (352 aa)    
Predicted Functional Partners:
AII85713.1
Putative ABC transporter inner membrane component.
 
 0.931
AII85712.1
Putative ABC transporter inner membrane component.
 0.917
msbA
Lipid A export ATP-binding/permease protein MsbA.
 
   
 
0.913
aglG
Alpha-glucoside transport system permease protein AglG.
 
 0.886
AII87990.1
Putative ribose ABC transporter, permease protein RbsC.
 
 0.886
modB
Molybdate ABC transporter, pemease protein ModB.
   
  0.880
AII85912.1
Type I secretion system ATP-binding component.
 
     
0.879
AII87991.1
Putative ribose ABC transporter, permease protein RbsC.
 
 0.871
ugpE
Sn-glycerol-3-phosphate transport system permease protein UgpE.
 0.849
AII87792.1
ABC transporter permease protein.
 0.844
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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