STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tpaTaurine--pyruvate aminotransferase Tpa. (505 aa)    
Predicted Functional Partners:
xsc
Sulfoacetaldehyde acetyltransferase Xsc.
  
  
 0.948
AII85633.1
Putative gamma-glutamyltransferase ywrD.
    
 0.902
AII85718.1
Putative transcriptional regulator, gntR family.
 
   
 0.757
AII85717.1
Hypothetical protein, DUF81 family.
 
     0.548
tauA
Taurine ABC transporter, periplasmic binding protein TauA.
 
     0.516
tauC
Taurine ABC transport system permease protein TauC.
 
     0.443
nadE
Glutamine-dependent NAD(+) synthase NadE.
   
 
 0.433
tauB
Taurine ABC transport system ATP-binding protein TauB.
 
    0.427
ribD
Riboflavin biosynthesis protein RibD.
     
 0.410
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.