STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gntZ6-phosphogluconate dehydrogenase GntZ. (471 aa)    
Predicted Functional Partners:
zwf
Glucose-6-phosphate 1-dehydrogenase Zwf.
 0.998
pgl
6-phosphogluconolactonase Pgl.
 
 
 0.970
rpiA
Ribose-5-phosphate isomerase A.
  
 
 0.946
cfxE
Ribulose-phosphate 3-epimerase, chromosomal.
   
 0.945
edd
Phosphogluconate dehydratase Edd.
   
 0.920
AII86471.1
Transaldolase.
  
 
 0.913
mtnP
Methylthioadenosine phosphorylase MtnP.
 
    
 0.852
kduD
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD.
  
 0.821
uxaA
Altronate hydrolase UxaA.
    
 0.804
AII85832.1
cbbT/tktB: transketolase.
  
 
 0.802
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.