STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII85837.1Putative 3-hydroxyisobutyrate dehydrogenase. (120 aa)    
Predicted Functional Partners:
AII85836.1
Putative 3-hydroxyisobutyrate dehydrogenase.
     0.993
ygbJ
Putative oxidoreductase YgbJ.
 
     0.953
fba
Fructose-bisphosphate aldolase Fba.
 
    0.906
AII85834.1
Transketolase, alpha subunit.
       0.778
AII85835.1
Transketolase, beta-subunit.
       0.778
fabG1
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
    0.774
mmsB2
3-hydroxyisobutyrate dehydrogenase MmsB.
  
     0.624
glxR
2-hydroxy-3-oxopropionate reductase GlxR.
  
     0.621
garR1
2-hydroxy-3-oxopropionate reductase GarR.
 
     0.567
AII87282.1
NAD-binding protein.
 
    
0.524
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.