STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctQ1TRAP dicarboxylate transporter, subunit DctQ. (290 aa)    
Predicted Functional Partners:
dctM1
TRAP dicarboxylate transporter, DctM subunit DctM.
 
  
  0.994
dctP1
TRAP dicarboxylate transporter, subunit DctP.
 
 
  0.990
AII85845.1
Hypothetical protein DUF1537.
 
     0.847
AII85844.1
Hypothetical protein.
 
     0.792
AII88085.1
Hypothetical protein.
  
     0.746
AII85847.1
Hypothetical protein, NAD dependent epimerase / dehydratase family.
  
     0.732
AII85846.1
Putative ribulose bisphosphate carboxylase large chain.
 
     0.725
tctB
Tripartite tricarboxylate transporter (TTT) protein TctB.
  
     0.679
AII85840.1
Putative HTH-type transcriptional regulator, GntR family.
 
     0.672
garR1
2-hydroxy-3-oxopropionate reductase GarR.
  
     0.660
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.