STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuABGlycine betaine transport system permease protein OpuAB. (343 aa)    
Predicted Functional Partners:
opuAA
Glycine betaine transport ATP-binding protein OpuAA.
 0.999
opuAC
Glycine betaine transporter substrate-binding protein OpuAC.
 
 0.999
proV
Glycine betaine/L-proline transport ATP-binding protein ProV.
 0.996
proX
Glycine betaine-binding periplasmic protein ProX.
 
 
 0.986
proW
Glycine betaine/L-proline transport system permease protein ProW.
  
  
 
0.920
potF
Putrescine ABC transport system putrescine-binding periplasmic protein PotF.
   
 
 0.599
potI
Putrescine ABC transport system permease protein PotI.
     
 0.595
AII86431.1
Putative phosphate binding protein PstS.
     
 0.586
AII88284.1
Hypothetical protein.
    
  0.584
bztC
Glutamate/glutamine/aspartate/asparagine transport system permease protein BztC.
   
 
 0.581
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.