STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII85984.1Putative ion channel. (308 aa)    
Predicted Functional Partners:
AII86343.1
Cl- channel, voltage-gated family protein.
 
   
 0.643
AII87116.1
Putative Trk system potassium uptake protein trkH.
  
 
 0.636
AII88255.1
Putative cation transporter.
  
 
 0.636
AII88369.1
Putative ribosomal RNA small subunit methyltransferase B.
  
   0.603
hemD
Putative uroporophyrinogen-III synthase HemD.
  
    0.486
AII85985.1
Integrase.
 
     0.477
moaE1
Molybdopterin synthase catalytic subunit MoaE.
   
    0.470
moaE2
Molybdopterin-converting factor subunit MoaE.
   
    0.470
AII87157.1
Hypothetical protein, NOL1/NOP2/sun family.
  
    0.411
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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