STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AII86018.1Hypothetical protein, thioredoxin. (136 aa)    
Predicted Functional Partners:
AII86017.1
Hypothetical protein, cytochrome C biogenesis protein.
 
 
 0.983
msrA
Peptide methionine sulfoxide reductase MsrA.
   
 0.675
dnaK
Chaperone protein DnaK.
  
 0.636
trxB
Thioredoxin reductase TrxB.
  
 
 0.593
nuoEF
NADH-quinone oxidoreductase subunits E/F (fused).
  
 
 0.575
AII86016.1
Inner membrane protein DUF6.
       0.553
ctaC
Cytochrome c oxidase subunit 2 precursor.
    
 
 0.525
ccmF
Cytochrome c-type biogenesis protein CcmF.
  
  
 0.505
ccmC
Cytochrome c-type biogenesis protein CcmC.
  
  
 0.496
soxE
Flavocytochrome c cytochrome subunit SoxE.
 
 
 0.470
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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