STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylGXylose ABC transporter, ATP-binding protein XylG. (252 aa)    
Predicted Functional Partners:
xylH
Xylose transport system permease protein XylH.
 
 0.993
xylF
D-xylose-binding periplasmic protein XylF.
 
 0.984
AII86669.1
Branched-chain amino acid ABC transporter, permease protein.
   
  0.861
AII85931.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein.
 
 
 
0.855
rbsC1
Ribose ABC transport system, permease protein RbsC.
 0.839
AII86072.1
Hypothetical protein.
 
     0.832
xylB1
Xylulose kinase XylB.
 
  
 0.819
xylR
Xylose repressor XylR.
   
 0.777
AII87855.1
Putative ribose ABC transport system, permease protein RbsC.
 0.764
AII86294.1
Dipeptide transport system permease protein.
 
 
 
 0.757
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.