STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII86108.1Putative sodium/calcium exchanger protein. (319 aa)    
Predicted Functional Partners:
AII86109.1
Putative short cprotein.
  
  
 0.819
kdsD
Arabinose 5-phosphate isomerase KdsD.
    
 0.674
AII86107.1
Hypothetical protein, peptidase family S49.
       0.645
uvrC
UvrABC system protein C.
  
    0.605
AII88379.1
Hypothetical protein; Flavin containing amine oxidoreductase.
   
    0.465
AII86105.1
ABC transporter ATP-binding protein.
  
 
 0.464
AII87430.1
Sodium/sulfate symporter.
 
  
 0.452
AII87255.1
Putative sodium/hydrogen exchanger.
   
 
 0.410
AII86106.1
Inner membrane transport permease.
       0.407
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.