STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII86225.1Putative fumarylacetoacetate hydrolase. (284 aa)    
Predicted Functional Partners:
allA
Ureidoglycolate hydrolase AllA.
     
  0.900
ureA
Urease gamma subunit UreA.
     
  0.900
ureB
Urease beta subunit UreB.
     
  0.900
ureC
Urease alpha subunit UreC.
   
 
  0.900
AII87488.1
Putative allantoin catabolism protein YlbA.
     
  0.900
glcB
Malate synthase GlcB.
  
 
 0.814
gyaR2
Glyoxylate reductase GyaR.
  
  0.813
glcF
Glycolate oxidase iron-sulfur subunit GlcF.
  
 
  0.808
sgaA1
Serine--glyoxylate aminotransferase SgaA.
   
 
  0.807
sgaA2
Serine--glyoxylate aminotransferase SgaA.
   
 
  0.807
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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