STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII86392.1Putative N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase. (244 aa)    
Predicted Functional Partners:
AII86391.1
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase.
  
 0.996
AII86390.1
Hypothetical protein, PrpF protein-like protein.
 
  
 0.986
AII86227.1
Dimethylmenaquinone methyltransferase.
 
  
 0.941
xylE
Metapyrocatechase XylE; Catechol 2,3-dioxygenase.
 
   
 0.803
gcvT1
Aminomethyltransferase GcvT.
  
     0.650
dctQ3
TRAP dicarboxylate transporter, subunit DctQ.
  
     0.619
AII86696.1
Hypothetical protein.
 
   
 0.595
AII86389.1
Putative transporter, periplasmic binding protein.
 
     0.570
AII86387.1
Putative transporter, permease protein.
 
     0.478
AII88569.1
Hypothetical protein, poly A polymerase.
  
  
 0.421
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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