STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII86394.1Transcriptional regulator. (249 aa)    
Predicted Functional Partners:
gcvT1
Aminomethyltransferase GcvT.
 
     0.845
AII86212.1
Transcriptional regulator, GntR family.
  
     0.772
AII85840.1
Putative HTH-type transcriptional regulator, GntR family.
  
     0.771
AII87853.1
Transcriptional regulator, GntR family.
 
  
 0.770
dctQ3
TRAP dicarboxylate transporter, subunit DctQ.
 
     0.709
dctP3
TRAP dicarboxylate transporter, subunit DctP.
 
     0.678
AII88410.1
HTH-type transcriptional regulator, GntR family.
  
     0.632
AII86666.1
HTH-type transcriptional regulator, GntR family.
  
     0.625
AII86393.1
Hypothetical protein.
 
    0.556
dctM3
TRAP dicarboxylate transporter, subunit DctM.
  
    0.532
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.