STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII86427.1Putative thiamine biosynthesis protein. (331 aa)    
Predicted Functional Partners:
AII86426.1
Putative ABC transporter permease protein.
 
 
 0.971
AII86425.1
Putative ABC transporter permease protein.
 
 
 0.965
AII86424.1
ABC transporter ATP-binding protein.
 
 
 0.960
dht
D-hydantoinase/dihydropyrimidinase Dht.
 
    0.840
AII86206.1
ABC transporter, permease protein.
 
 
 0.687
amaB
N-carbamoyl-L-amino acid hydrolase AmaB.
 
  
 0.676
AII86207.1
ABC transporter, permease protein.
 
 
 0.661
tauB
Taurine ABC transport system ATP-binding protein TauB.
  
 
 0.649
AII86209.1
Sulfonate/nitrate ABC transporter, ATPase.
  
 
 0.649
AII86421.1
Putative HTH-type transcriptional regulator.
 
   
 0.644
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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