STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugdUDP-glucose 6-dehydrogenase Ugd. (388 aa)    
Predicted Functional Partners:
lspL2
UDP-glucoronate 5'-epimerase LspL.
 
 0.960
galU
UTP-glucose-1-phosphate uridylyltransferase GalU.
  
 0.953
lspL1
UDP-glucoronate 5'-epimerase LspL.
 
 0.949
galE
UDP-glucose 4-epimerase GalE.
  
 
 0.945
rfbA
Glucose-1-phosphate thymidylyltransferase RfbA.
  
  
 0.919
AII86267.1
Polysaccharide biosynthesis protein.
  
  
 0.919
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase RfbC.
  
  
 0.913
rfbB
dTDP-glucose 4,6-dehydratase RfbB.
 
  
 0.773
AII87402.1
rffG/rfbB: dTDP-glucose 4,6-dehydratase.
  
  
 0.773
gpsA
Glycerol-3-phosphate dehydrogenase GpsA.
    
 0.733
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.