STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII86493.1Putative branched-chain-amino-acid aminotransferase IlvE. (299 aa)    
Predicted Functional Partners:
ilvD1
Dihydroxy-acid dehydratase IlvD.
  
 0.949
AII86507.1
alpha-IPM synthase/homocitrate synthase.
  
 0.949
ilvD2
Dihydroxy-acid dehydratase IlvD.
  
 0.949
leuA
2-isopropylmalate synthase LeuA.
  
 0.949
ilvD3
Dihydroxy-acid dehydratase IlvD.
  
 0.949
AII88563.1
Hypothetical protein, branched-chain-amino-acid aminotransferase-like protein.
     0.939
ilvE
Branched-chain-amino-acid aminotransferase IlvE.
  
  
 
0.927
AII88562.1
Putative aminotransferase class IV.
  
  
 
0.925
metB
Cystathionine gamma-synthase MetB.
   
 0.912
panB1
3-methyl-2-oxobutanoate hydroxymethyltransferase PanB.
    
 0.905
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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