STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII86555.1Hypothetical protein. (186 aa)    
Predicted Functional Partners:
rhlB
ATP-dependent RNA helicase RhlB.
       0.795
AII88129.1
Hypothetical protein.
  
 0.777
alaS
alanyl-tRNA synthase AlaS.
   
 0.776
AII86553.1
Hypothetical protein, lysophospholipase L2.
 
   0.751
ydaM
Putative glycosyltransferase YdaM.
 
 
 0.750
dnaK
Chaperone protein DnaK.
  
 0.745
dcd
Deoxyguanosinetriphosphate triphosphohydrolase-like protein Dcd.
 
     0.726
AII86554.1
Putative sterol-binding protein.
       0.703
AII86152.1
Hypothetical protein.
 
   
 0.699
rpoA
DNA-directed RNA polymerase alpha subunit RpoA.
  
 0.684
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.