STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII86579.1Putative protein Mrp. (354 aa)    
Predicted Functional Partners:
fabF2
3-oxoacyl-[acyl-carrier-protein] synthase FabF.
 
 
    0.801
nuoEF
NADH-quinone oxidoreductase subunits E/F (fused).
    
 0.788
AII87543.1
RNA modification enzyme, MiaB family.
  
   
 0.705
AII86580.1
Hypothetical protein.
       0.686
boxA
benzoyl-CoA oxygenase component A.
   
 0.608
AII87013.1
Putative glutaredoxin.
    
 0.568
fabB
3-oxoacyl-[acyl-carrier-protein] synthase FabB.
 
 
    0.550
fabF1
3-oxoacyl-[acyl-carrier-protein] synthase FabF.
 
 
    0.528
bcp
Peroxiredoxin Bcp.
  
  
 0.516
nuoI
NADH-quinone oxidoreductase subunit I.
  
 
 0.484
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.