STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctM6TRAP dicarboxylate transporter, subunit DctM. (453 aa)    
Predicted Functional Partners:
AII86645.1
TRAP transporter, 4TM/12TM fusion protein.
  
  
  0.951
dctP6
TRAP dicarboxylate transporter, subunit DctP.
 
 
 0.874
dctQ6
TRAP dicarboxylate transporter, subunit DctQ.
  
 0.838
dctP3
TRAP dicarboxylate transporter, subunit DctP.
 
 
 0.807
dctP2
TRAP dicarboxylate transporter, subunit DctP.
 
 
 0.779
AII86651.1
Glutathione S-transferase.
       0.718
dctP9
TRAP dicarboxylate transporter, subunit DctP.
 
 
 0.694
AII86654.1
Hypothetical protein, DUF6 transmembrane protein.
  
    0.662
dctP5
TRAP dicarboxylate transporter, subunit DctP.
 
 0.654
dctP11
TRAP dicarboxylate transporter, subunit DctP.
 
 
 0.574
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.