STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alrAlanine racemase, biosynthetic. (347 aa)    
Predicted Functional Partners:
ddl
D-alanine--D-alanine ligase Ddl.
 
 
 0.976
AII86586.1
Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF.
   
 0.969
dat
D-alanine aminotransferase Dat.
    
 0.940
AII88384.1
Saccharopine dehydrogenase (NAD+,L-lysine-forming).
  
  
 0.899
AII86935.1
ABC transporter ATP-binding protein.
       0.829
AII86936.1
Hypothetical protein DUF140.
       0.829
nadD
Nicotinic acid mononucleotide adenyltransferase NadD.
  
  
 0.812
sgaA1
Serine--glyoxylate aminotransferase SgaA.
    
 0.808
sgaA2
Serine--glyoxylate aminotransferase SgaA.
    
 0.808
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD.
 
 
 
 0.789
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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