STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdhMalate dehydrogenase Mdh. (343 aa)    
Predicted Functional Partners:
gltA
Citrate synthase GltA.
  
 0.993
maeB
NADP-dependent malic enzyme MaeB.
  
 0.974
fumC
Fumarate hydratase class II.
  
 0.968
citE
Citrate lyase beta subunit CitE.
  
 
 0.965
tyrB
Aromatic-amino-acid aminotransferase TyrB.
   
 0.943
pyc
Pyruvate carboxylase Pyc.
  
 0.943
glcB
Malate synthase GlcB.
   
 0.941
pckA
Phosphoenolpyruvate carboxykinase PckA.
  
 
 0.935
gltB
Glutamate synthase [NADPH] large chain GltB.
  
 
 0.927
icd
Isocitrate dehydrogenase Icd.
  
  
 0.919
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.