AII86956.1 protein (Planktomarina temperata)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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gene co-occurrence

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Score

AII86956.1

Non-specific ribonucleoside hydrolase rihC. (307 aa)

Predicted Functional Partners:

AII86952.1

0.939

add

0.926

rihA

0.920

guaD

0.920

surE1

0.917

apt

0.915

hpt

0.911

amn

0.908

xdhB

0.908

ade

0.906

Your Current Organism:

Planktomarina temperata

NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AII86952.1	AII86956.1	RCA23_c14090	RCA23_c14130	Purine nucleoside phosphorylase deoD-type.	Non-specific ribonucleoside hydrolase rihC.	0.939
AII86952.1	add	RCA23_c14090	RCA23_c02070	Purine nucleoside phosphorylase deoD-type.	Adenosine deaminase Add.	0.913
AII86952.1	ade	RCA23_c14090	RCA23_c04530	Purine nucleoside phosphorylase deoD-type.	Adenine deaminase Ade.	0.906
AII86952.1	amn	RCA23_c14090	RCA23_c04540	Purine nucleoside phosphorylase deoD-type.	AMP nucleosidase Amn.	0.905
AII86952.1	apt	RCA23_c14090	RCA23_c19380	Purine nucleoside phosphorylase deoD-type.	Adenine phosphoribosyltransferase Apt.	0.928
AII86952.1	guaD	RCA23_c14090	RCA23_c19140	Purine nucleoside phosphorylase deoD-type.	Guanine deaminase GuaD.	0.900
AII86952.1	hpt	RCA23_c14090	RCA23_c15670	Purine nucleoside phosphorylase deoD-type.	Hypoxanthine phosphoribosyltransferase Hpt.	0.914
AII86952.1	rihA	RCA23_c14090	RCA23_c17190	Purine nucleoside phosphorylase deoD-type.	Pyrimidine-specific ribonucleoside hydrolase RihA.	0.900
AII86952.1	surE1	RCA23_c14090	RCA23_c02330	Purine nucleoside phosphorylase deoD-type.	5'-nucleotidase SurE.	0.903
AII86952.1	xdhB	RCA23_c14090	RCA23_c21160	Purine nucleoside phosphorylase deoD-type.	Xanthine dehydrogenase XdhB.	0.900
AII86956.1	AII86952.1	RCA23_c14130	RCA23_c14090	Non-specific ribonucleoside hydrolase rihC.	Purine nucleoside phosphorylase deoD-type.	0.939
AII86956.1	add	RCA23_c14130	RCA23_c02070	Non-specific ribonucleoside hydrolase rihC.	Adenosine deaminase Add.	0.926
AII86956.1	ade	RCA23_c14130	RCA23_c04530	Non-specific ribonucleoside hydrolase rihC.	Adenine deaminase Ade.	0.906
AII86956.1	amn	RCA23_c14130	RCA23_c04540	Non-specific ribonucleoside hydrolase rihC.	AMP nucleosidase Amn.	0.908
AII86956.1	apt	RCA23_c14130	RCA23_c19380	Non-specific ribonucleoside hydrolase rihC.	Adenine phosphoribosyltransferase Apt.	0.915
AII86956.1	guaD	RCA23_c14130	RCA23_c19140	Non-specific ribonucleoside hydrolase rihC.	Guanine deaminase GuaD.	0.920
AII86956.1	hpt	RCA23_c14130	RCA23_c15670	Non-specific ribonucleoside hydrolase rihC.	Hypoxanthine phosphoribosyltransferase Hpt.	0.911
AII86956.1	rihA	RCA23_c14130	RCA23_c17190	Non-specific ribonucleoside hydrolase rihC.	Pyrimidine-specific ribonucleoside hydrolase RihA.	0.920
AII86956.1	surE1	RCA23_c14130	RCA23_c02330	Non-specific ribonucleoside hydrolase rihC.	5'-nucleotidase SurE.	0.917
AII86956.1	xdhB	RCA23_c14130	RCA23_c21160	Non-specific ribonucleoside hydrolase rihC.	Xanthine dehydrogenase XdhB.	0.908

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Network Stats

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Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0044718

Siderophore transmembrane transport

5 of 20

1.91

2.51

3.22e-06

GO:0006811

Ion transport

9 of 188

1.19

1.54

2.55e-07

GO:0071702

Organic substance transport

7 of 213

1.03

1.0

9.66e-05

GO:0006810

Transport

10 of 501

0.81

0.79

8.34e-06

GO:0055085

Transmembrane transport

7 of 381

0.78

0.59

0.0027

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0031992

Energy transducer activity

4 of 4

2.51

3.12

1.20e-06

GO:0060089

Molecular transducer activity

6 of 31

1.8

2.74

2.53e-07

GO:0015343

Siderophore transmembrane transporter activity

5 of 25

1.81

2.41

3.09e-06

GO:0022857

Transmembrane transporter activity

9 of 371

0.9

1.26e-05

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0030313

Cell envelope

9 of 140

1.32

2.05

2.15e-09

GO:0009279

Cell outer membrane

6 of 113

1.24

1.38

2.28e-05

GO:0030288

Outer membrane-bounded periplasmic space

3 of 26

1.57

1.26

0.0015

GO:0071944

Cell periphery

10 of 665

0.69

0.63

2.28e-05

GO:0016020

Membrane

10 of 1191

0.44

0.35

0.0024

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:37425997

(2023) Polymeric carbohydrates utilization separates microbiomes into niches: insights into the diversity of microbial carbohydrate-active enzymes in the inner shelf of the Pearl River Estuary, China.

2 of 3

2.34

1.51

0.0015

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4462

Mixed, incl. TonB-dependent receptor-like, beta-barrel domain superfamily, and Sulfotransferase family

9 of 110

1.42

2.36

1.54e-09

CL:4472

TonB box, and S-adenosyl-L-methionine dependent methyltransferase, Alr7345, predicted

6 of 57

1.53

2.14

9.05e-07

CL:4475

TonB box

4 of 28

1.67

1.75

9.62e-05

CL:4660

Mixed, incl. Periplasmic binding protein, and Bacterial microcompartment

3 of 11

1.95

1.68

0.00042

CL:4478

TonB box

3 of 20

1.69

1.29

0.0018

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0009279

Cell outer membrane

5 of 103

1.2

0.93

0.0027

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0798

TonB box

6 of 55

1.55

2.09

1.78e-06

KW-0675

Receptor

5 of 43

1.58

1.89

1.65e-05

KW-0998

Cell outer membrane

5 of 66

1.39

1.48

8.09e-05

KW-0735

Signal-anchor

2 of 4

2.21

1.21

0.0055

KW-1134

Transmembrane beta strand

3 of 43

1.36

0.85

0.0110

(more ...)

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF07715

TonB-dependent Receptor Plug Domain

6 of 57

1.53

1.95

5.80e-06

PF03544

Gram-negative bacterial TonB protein C-terminal

3 of 5

2.29

1.91

0.00023

PF00593

TonB dependent receptor

5 of 50

1.51

1.61

8.84e-05

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR039426

TonB-dependent receptor-like

6 of 40

1.69

2.29

2.10e-06

IPR000531

TonB-dependent receptor-like, beta-barrel

6 of 55

1.55

1.96

6.12e-06

IPR012910

TonB-dependent receptor, plug domain

6 of 57

1.53

1.94

6.12e-06

IPR036942

TonB-dependent receptor-like, beta-barrel domain superfamily

6 of 65

1.48

1.83

7.80e-06

IPR037682

TonB, C-terminal

3 of 5

2.29

1.82

0.00036

(more ...)

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