STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpd2Dihydrolipoyl dehydrogenase Lpd. (465 aa)    
Predicted Functional Partners:
pdhB
Pyruvate dehydrogenase E1 component beta subunit PdhB.
 0.999
pdhC
Dihydrolipoyllysine-residue acetyltransferase PdhC.
 0.997
sucB
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex.
 0.993
pdhA
Pyruvate dehydrogenase E1 component alpha subunit PdhA.
 
 0.993
gcvP
Glycine dehydrogenase GcvP.
  
 
 0.982
sucA
2-oxoglutarate dehydrogenase E1 component SucA.
  
 0.968
gcvH
Glycine cleavage system protein GcvH.
 
  
 0.965
gcvT2
Aminomethyltransferase; Similar to mitochondrial aminomethyltransferase.
 
 0.939
glyA
Serine hydroxymethyltransferase GlyA.
 
 0.937
dmdA2
Putative dimethyl sulfoniopropionate demethylase DmdA.
  
 0.922
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.