STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmFCytochrome c-type biogenesis protein CcmF. (653 aa)    
Predicted Functional Partners:
ccmH
Cytochrome c-type biogenesis protein CcmH.
  
 0.997
ccmG
Cytochrome c biogenesis protein CcmG.
 
  
 0.985
ccmE
Cytochrome c-type biogenesis protein CcmE.
 
 
 0.973
ccmC
Cytochrome c-type biogenesis protein CcmC.
 
  
 0.901
ccmB
Cytochrome c-type biogenesis protein CcmB.
 
  
 0.888
ccmA
Cytochrome c biogenesis ATP-binding export protein CcmA.
 
   
 0.861
cycH
Cytochrome c-type biogenesis protein CycH.
 
 
 0.843
argC
N-acetyl-gamma-glutamyl-phosphate reductase ArgC.
       0.606
AII87024.1
Putative enoyl-CoA hydratase FadB.
       0.595
AII86018.1
Hypothetical protein, thioredoxin.
  
  
 0.505
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.