STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87068.1Hypothetical protein. (94 aa)    
Predicted Functional Partners:
fliG
Flagellar motor switch protein G.
  
    0.853
fliC
Flagellin FliC.
   
    0.840
AII86036.1
Hypothetical protein.
  
     0.758
AII85881.1
Hypothetical protein.
  
     0.716
ctrA
Cell cycle transcriptional regulator.
 
    0.705
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU.
       0.696
AII87073.1
Hypothetical protein.
  
     0.660
AII85752.1
GcrA cell cycle regulator.
  
     0.641
regB
Sensor histidine kinase RegB.
  
     0.636
dcd
Deoxyguanosinetriphosphate triphosphohydrolase-like protein Dcd.
  
     0.635
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.