STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betA2Choline dehydrogenase BetA. (554 aa)    
Predicted Functional Partners:
AII86376.1
Aldehyde dehydrogenase.
 
 
 0.905
betB
Betaine aldehyde dehydrogenase BetB.
 
 
 0.905
psd
Phosphatidylserine decarboxylase proenzyme Psd.
     
  0.800
pld
Pyridoxal 4-dehydrogenase Pld.
    
  0.505
AII88129.1
Hypothetical protein.
    
 0.459
AII87085.1
ABC transporter, ATP-binding protein.
  
    0.449
AII87084.1
ABC transporter, permease protein.
       0.443
AII87086.1
ABC transporter, periplasmic substrate-binding protein.
       0.443
AII87087.1
Putative membrane protein.
       0.443
AII88011.1
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit.
    
 0.434
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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