STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ntrCNitrogen regulation protein NtrC. (414 aa)    
Predicted Functional Partners:
ntrB
Histidine kinase, nitrogen regulation protein NtrB.
 0.995
ntrY
Histidine kinase, nitrogen regulation protein NtrY.
 
 0.810
cheA
Chemotaxis histidine kinase CheA.
  
 
 0.778
rpoN
RNA polymerase sigma-54.
 
  
 0.771
ntrX
Nitrogen assimilation regulatory protein NtrX.
 
    
0.673
dusB
tRNA-dihydrouridine synthase B.
  
  
 0.578
flhA
Flagellar biosynthesis protein FlhA.
  
  
 0.517
fliG
Flagellar motor switch protein G.
  
  
 0.509
fliM
Flagellar motor switch proteins FliM.
  
  
 0.506
flhF
Flagellar biosynthesis protein FlhF.
  
  
 0.498
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.