STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87139.1Putative phenylacetic acid degradation protein. (177 aa)    
Predicted Functional Partners:
gmk
Guanylate kinase Gmk.
  
    0.836
AII87141.1
Hypothetical protein, YicC-like protein.
       0.829
cynT
Carbonic anhydrase CynT.
    
 
 0.783
AII85846.1
Putative ribulose bisphosphate carboxylase large chain.
    
 
 0.731
AII87142.1
Hypothetical protein, DUF1457.
       0.581
dht
D-hydantoinase/dihydropyrimidinase Dht.
  
    0.513
phoR
Alkaline phosphatase synthesis sensor protein PhoR.
 
     0.477
folE
GTP cyclohydrolase FolE.
  
  
 0.443
AII87137.1
Hypothetical protein, acetyltransferase-like protein.
       0.422
AII87138.1
Hypothetical protein, transcription factor NusA like protein.
       0.413
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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