STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iolEInosose dehydratase IolE. (283 aa)    
Predicted Functional Partners:
iolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD.
 
 
 0.993
idhA
Inositol 2-dehydrogenase IdhA.
 
 0.984
AII87171.1
Putative oxidoreductase.
  
 0.964
AII87169.1
Putative oxidoreductase.
  
 0.933
AII87188.1
Putative oxidoreductase.
  
 
 0.932
AII86759.1
Xylose isomerase.
  
  
 
0.929
iolB1
5-deoxy-glucuronate isomerase IolB.
  
 0.919
iolB2
5-deoxy-glucuronate isomerase IolB.
 
  
 0.896
iolC
5-dehydro-2-deoxygluconokinase IolC.
 
  
 0.861
fba
Fructose-bisphosphate aldolase Fba.
 
  
 0.834
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.