STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctP8TRAP dicarboxylate transporter, subunit DctP. (364 aa)    
Predicted Functional Partners:
dctM8
TRAP dicarboxylate transporter, subunit DctM.
 
 
 0.989
dctQ8
TRAP dicarboxylate transporter, subunit DctQ.
 
    0.906
dctQ13
TRAP dicarboxylate transporter, subunit DctQ.
 
    0.781
dctM13
TRAP dicarboxylate transporter, subunit DctM.
 
  
 0.771
dctM/dctQ
TRAP transporter, DctM/DctQ subunit.
 
  
 0.766
gatA2
glutamyl-tRNA(Gln) amidotransferase subunit A.
 
  
 0.714
dctM7
TRAP dicarboxylate transporter, subunit DctM.
 
  
 0.566
gyaR2
Glyoxylate reductase GyaR.
 
     0.486
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.