STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87319.1Modification methylase, hemK family. (283 aa)    
Predicted Functional Partners:
prfA
Peptide chain release factor 1.
 
 0.999
trmB
tRNA (guanine-N(7)-)-methyltransferase TrmB.
 
 
 
 0.866
plsX
Fatty acid/phospholipid synthesis protein PlsX.
  
    0.667
atpE
ATP synthase subunit c.
  
   0.642
atpD
ATP synthase beta subunit AtpD.
 
   0.636
AII87318.1
Hypothetical protein.
       0.633
AII87321.1
Hypothetical protein.
       0.624
atpH
ATP synthase delta chain AtpH.
  
   0.618
speB1
Agmatinase SpeB.
       0.609
atpG
ATP synthase gamma chain AtpG.
  
   0.601
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.