STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplI50S ribosomal protein L9. (197 aa)    
Predicted Functional Partners:
rpsR
30S ribosomal protein S18.
 
 
 0.997
rpsF
30S ribosomal protein S6.
 
 
 0.996
rpoC
DNA-directed RNA polymerase beta subunit RpoC.
 
 
 0.991
rplY
50S ribosomal protein L25.
 
 
 0.987
rplO
50S ribosomal protein L15.
  
 0.987
rplD
50S ribosomal protein L4.
 
 0.987
rpsQ
30S ribosomal protein S17.
 
 
 0.986
rplU
50S ribosomal protein L21.
 
 
 0.985
rplC
50S ribosomal protein L3.
 
 
 0.985
rpsP
30S ribosomal protein S16.
  
 
 0.985
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.