STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87358.1Putative lipid A biosynthesis lauroyl acyltransferase. (299 aa)    
Predicted Functional Partners:
waaA1
3-deoxy-D-manno-octulosonic-acid transferase WaaA.
 
  
 0.970
waaA2
3-deoxy-D-manno-octulosonic-acid transferase WaaA.
 
  
 0.969
AII85614.1
Putative 3-deoxy-D-manno-octulosonic-acid transferase.
 
  
 0.944
AII86171.1
Hypothetical protein, lipid A biosynthesis acyltransferase.
  
  
 
0.919
lpxK
Tetraacyldisaccharide 4'-kinase LpxK.
 
  
 0.832
lpxB
lipid-A-disaccharide synthase LpxB.
 
   
 0.804
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC.
 
   
 0.793
lpxA
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase LpxA.
 
   
 0.793
AII87354.1
Putative nitrile hydratase, beta subunit.
       0.790
nthA
Nitrile hydratase alpha subunit NthA.
       0.790
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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