STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87419.1Putative 3-oxoadipate enol-lactonase 2, alpha/beta hydrolase family. (262 aa)    
Predicted Functional Partners:
pcaC
4-carboxymuconolactone decarboxylase PcaC.
 
 0.978
limB
Limonene 1,2-monooxygenase LimB.
 
  
 0.891
AII87420.1
Hypothetical protein DUF1185.
 
     0.862
AII87399.1
Putative carboxymuconolactone decarboxylase.
 
 0.836
AII87422.1
Aldehyde dehydrogenase, cytosolic.
 
    0.792
AII85726.1
Hypothetical protein.
  
     0.680
pcaB
3-carboxy-cis,cis-muconate cycloisomerase PcaB.
  
 0.604
pcaH
Protocatechuate 3,4-dioxygenase beta chain PcaH.
 
   
 0.597
pcaG
Protocatechuate 3,4-dioxygenase alpha chain PcaG.
 
   
 0.578
pobA
P-hydroxybenzoate hydroxylase PobA.
  
  
 0.518
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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