Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AII87447.1Putative inositol monophosphatase family protein. (274 aa)    
Predicted Functional Partners:
AII87446.1
Putative hydroxydechloroatrazine ethylaminohydrolase.
  
    0.778
AII87448.1
Putative helix-turn-helix protein.
       0.639
rpoZ
DNA-directed RNA polymerase subunit omega.
  
   0.619
rpoC
DNA-directed RNA polymerase beta subunit RpoC.
  
 
 0.597
AII87141.1
Hypothetical protein, YicC-like protein.
 
 
    0.561
nusG3
Transcription antitermination protein NusG.
   
 
 0.557
nusA
Transcription elongation protein NusA.
   
   0.546
AII88369.1
Putative ribosomal RNA small subunit methyltransferase B.
  
 
 0.526
rpoB
DNA-directed RNA polymerase beta subunit RpoB.
    
   0.496
dusB
tRNA-dihydrouridine synthase B.
  
    0.446
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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