STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AII87449.1Putative alcohol dehydrogenase. (321 aa)    
Predicted Functional Partners:
trxB
Thioredoxin reductase TrxB.
     0.781
AII88076.1
Nodulation protein N-like protein.
 
 0.741
fabF1
3-oxoacyl-[acyl-carrier-protein] synthase FabF.
 
 
  
 0.669
fabF2
3-oxoacyl-[acyl-carrier-protein] synthase FabF.
 
 
  
 0.602
ccr
crotonyl-CoA reductase Ccr.
  
     0.589
AII87450.1
Putative inner membrane protein.
  
    0.522
AII88077.1
Putative phosphotransferase, eukaryotic acyl-CoA dehydrogenase.
 
   0.474
AII86946.1
Putative mesaconyl-CoA hydratase.
 
 
 0.440
alkK
medium-chain-fatty-acid--CoA ligase AlkK.
 
 
 0.402
AII87018.1
Hypothetical protein, pyruvate ferredoxin/flavodoxin oxidoreductase.
      
 0.400
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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