Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
modCMolybdate ABC transporter, ATP-binding protein ModC. (355 aa)    
Predicted Functional Partners:
modB
Molybdate ABC transporter, pemease protein ModB.
 
 0.999
modA
Molybdate ABC transporter, substrate binding protein ModA.
 
 0.998
AII87461.1
Hypothetical protein, NUDIX hydrolase.
       0.570
ccmA
Cytochrome c biogenesis ATP-binding export protein CcmA.
  
     0.476
AII87462.1
Hypothetical protein DUF1178.
       0.458
bchL
Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein BchL.
  
  
 0.433
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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