STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aptAdenine phosphoribosyltransferase Apt. (186 aa)    
Predicted Functional Partners:
mtnP
Methylthioadenosine phosphorylase MtnP.
 
 0.979
ade
Adenine deaminase Ade.
   
 0.969
purH
Bifunctional purine biosynthesis protein PurH; Includes phosphoribosylaminoimidazolecarboxamide formyltransferase.
  
 0.965
purB
Adenylosuccinate lyase PurB.
  
 0.955
adk
Adenylate kinase Adk.
  
 0.950
amn
AMP nucleosidase Amn.
   
 0.937
surE2
5'-nucleotidase SurE.
    
 0.928
AII86952.1
Purine nucleoside phosphorylase deoD-type.
    
 0.926
surE1
5'-nucleotidase SurE.
    
 0.917
AII87594.1
Multi-copper polyphenol oxidoreductase laccase.
    
  0.907
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.